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摘要： 油体固醇蛋白(steroleosin)是植物的油体中与油体的膜相结合的一种含量较少的固醇结合类短链的脱氢还原酶,根据其分子量可分为固醇蛋白A和B。本文以甘蓝型油菜steroleosin-A和steroleosin-B为关键词下载相关的固醇蛋白基因,并在拟南芥、水稻、甘蓝型油菜、甘蓝和白菜型油菜等18个物种中鉴定其直系同源基因，构建进化树，分析其进化关系。本研究利用GSDS软件对这些基因的基因组DNA序列与编码框CDS序列进行比较，鉴定出内含子和外显子的剪接位点，从而鉴定出这些基因的结构和内含子相位的规律，并以油菜SLO基因的编码序列为探针，以BLAST搜索为手段分别对油菜dbEST数据库进行搜索，同时搜索每一个基因编码序列对应的UniGene，通过分析EST和Unigene数据剖析油菜油体固醇蛋白基因的转录活性。42962
毕业论文关键词：甘蓝型油菜；油体固醇蛋白；序列分析
Sequence and Phylogenetic Analysis of the Steroleosin Genes in Brassica napus and Its Parental Species
Abstract: Steroleosin is the short chain dehydrogenase reductase that binds to oil body and oil body membrane in plants. According to their molecular weight, there are two types of steroleosins including steroleosin-A and steroleosin-B. In this paper, Sequences of the steroleosin-a and steroleosin-b in Brassica napus were downloaded and used as queries. Subsequently, orthologous genes from 18 model plants of steroleosin genes were identified by BLAST search. In addition, phylogenetic tree was constructed and phylogenetic relationships of these SLO genes were addressed in detail. In this study, the comparison of genomic DNA and CDS sequences were performed using the the GSDS software, and the splice sites of intron and exon were further identified. Finally, each of the gene structures of these genes was visualized with phrase of intron. The coding sequence of SLO gene was used as the probe, and the BLAST search method was used to search the dbEST and Unigene database. At the same time, all the ESTs were analyzed corresponding to the Unigene, and the presence and absence of EST was determined to predict the transcriptional activity of rapeseed steroleosin genes. The results are of great importance for further study SLO genes in Brasssica species.
Key words: Brassica napus; Steroleosin; Sequence Analysis
目 录
摘要 4
1 引言 5
2 材料与方法 6
2.1 植物材料选取 6
2.2油菜油体固醇蛋白基因的搜索与下载 6
2.3 序列比对与进化关系分析 7
2.4 油菜油体固醇蛋白基因的序列分析 7
2.5 油菜油体固醇蛋白基因的表达分析 7
3 结果与分析 8
3.1 油菜油体固醇蛋白基因的鉴定 8
3.2 油菜及其他植物油体固醇蛋白的系统进化关系 8
3.3 油菜油体固醇蛋白基因的结构特征 10
3.4 油菜油体固醇蛋白的保守基序与功能结构域特点 11
3.5 油菜油体固醇蛋白的跨膜结构域特征 12
3.6 油菜油体固醇蛋白基因的表达规律 13
4 讨论与结论 14
参考文献 15
附录 16
致谢